Jmol molecule viewer 14.29.29

Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry.

Features

• Free, open-source software licensed under the GNU Lesser General Public License
• Applet, Application, and Systems Integration Component*
• Multi-language
• Cross-platform
• Supports all major web browsers: Internet Explorer, Mozilla and Firefox, Safari, Google Chrome, Opera, Konqueror, IceWeasel, ...
• High-performance 3D rendering with no hardware requirements
• File formats (see also the file formats section within Jmol Wiki):
  • MOL MDL / Elsevier / Symyx structure (classic version V2000)
  • V3000 MDL / Elsevier / Symyx structure (new version V3000)
  • SDF MDL / Elsevier / Symyx structure (multiple models)
  • CTFile MDL / Elsevier / Symyx chemical table (generic)
  • CIF Crystallographic Information File - standard from the International Union of Crystallography
  • mmCIF Macromolecular Crystallographic Information File - standard from the International Union of Crystallography
  • CML Chemical Markup Language
  • PDB Protein Data Bank - Research Collaboratory for Structural Bioinformatics
  • XYZ XYZ format, XMol file - Minnesota Supercomputer Institute
  • XYZ+vib XYZ format with added vibrational vector information
  • XYZ-FAH XYZ format for Folding@home
  • MOL2 Sybyl, Tripos
  • Alchemy Tripos
  • CSF Fujitsu CAChe chemical structure, now Fujitsu Sygress
  • GAMESS General Atomic and Molecular Electronic Structure System output (both US and UK variants) - Gordon Research Group, Iowa State University
  • Gaussian Gaussian 94/98/03 output - Gaussian, Inc.
  • Cube Gaussian, Inc.
  • Ghemical The Ghemical computational chemistry package
  • MM1GP Ghemical molecular mechanics file
  • HIN HIN / HIV files from HyperChem - Hypercube, Inc.
  • Jaguar Schrodinger, LLC
  • MOLPRO Molpro output
  • MOPAC MOPAC 93/97/2002 output (public domain)
  • MGF MOPAC 2007 (v.7.101) graphf output (public domain)
  • NWCHEM NWChem output - Pacific Northwest National Laboratory
  • odydata Odyssey data - WaveFunction, Inc.
  • xodydata Odyssey XML data - WaveFunction, Inc.
  • QOUT Q-Chem, Inc.
  • SHELX Structural Chemistry Department, University of Göttingen (Germany)
  • SMOL Spartan data - Wavefunction, Inc.
  • spinput Spartan data - Wavefunction, Inc.
  • GRO Gromos87 format from GROMACS
  • PQR Modified pdb format including charge and radius
  • Amber The Amber package of molecular simulation programs
  • JME Java Molecular Editor - Peter Ertl
  • CASTEP The CASTEP software package, uses density functional theory
  • FHI-aims Full-potential / all-electron electronic structure theory with local orbitals - Fritz-Haber-Institut der Max-Planck-Gesellschaft
  • VASP VASP / VAMP / Vienna ab-initio simulation package
  • DGrid Miroslav Kohout, Max-Planck Institute
  • ADF ADF output - Amsterdam Density Functional
  • XSD Accelrys Materials Studio
  • AGL ArgusLab
  • DFT Wien2k
  • AMPAC AMPAC output - Semichem, Inc.
  • WebMO WebMO interface to computational chemistry packages
  • Molden Electron density / molecular orbitals
  • PSI3 Output files from the PSI3 suite of quantum chemical programs
  • CRYSTAL Output files from CRYSTAL, a computational tool for solid state chemistry and physics. Theoretical Chemistry Group, Univ. Torino, Italy.
• Files which are compressed with gzip will automatically be decompressed
• Animations
• Vibrations
• Surfaces
• Orbitals
• Support for unit cell and symmetry operations
• Schematic shapes for secondary structures in biomolecules
• Measurements of distance, angle, torsion angle
• Support for RasMol/Chime scripting language
• JavaScript support library (Jmol.js)
• Exports to jpg, png, gif, ppm, pdf, POV-Ray, Gaussian, Maya, vrml, x3d, idtf, web page.